arrayMap - genomic arrays for copy number profiling in human cancer

arrayMap is a curated reference database and bioinformatics resource targeting copy number profiling data in human cancer. The arrayMap database provides an entry point for meta-analysis and systems level data integration of high-resolution oncogenomic CNA data. The current data reflects:

  • 53562 genomic copy number arrays
  • 800 experimental series
  • 277 array platforms
  • 239 ICD-O cancer entities
  • 522 publications (Pubmed entries)

For the majority of the samples, probe level visualization as well as customized data representation facilitate gene level and genome wide data review. Results from multi-case selections can be connected to downstream data analysis and visualization tools, as we provide through our Progenetix project.

arrayMap is developed by the group "Theoretical Cytogenetics and Oncogenomics" at the Institute of Molecular Life Sciences of the University of Zurich.

Feel free to use the data and tools for academic research projects and other applications. If more support and/or custom analysis is needed, please contact Michael Baudis regarding a collaborative project or a special license.