page info
Selection and display of array specific data
42641 arrays extracted from 630 series, published in 475 articles and mapped to 195 cancer entities are registered in the arrayMap database.
search PMID
[?] e.g. "19077451"
search series
[?] single or comma separated values: e.g. "GSE, E-TAB" for an OR selection getting all arrays part of GEO and arrayExpress series
search array ID
[?] e.g. "GSM244379"
search platform ID
[?] e.g. "GPL6181"
search platform text
[?] part of the platform name tag, e.g. "Affy"; not all corresponding arrays may be found (e.g. "Sanger" may not return all BAC-P1 arrays based on the Sanger clone set)
search ICD-O code
[?] e.g. "8140/3"
ICD topography code
[?] search for locus codes (e.g. "50"; also multiple separated values
search diagnosis text
[?] single or comma separated values: e.g. "glio, astro" for an OR selection
search locus text
[?] single or comma separated values: e.g. "skin, vulva" for an OR selection
MATCH (MULTIPLE) REGIONs & types
[?] Region(s) to be matched; e.g. list only cases which have an imbalance overlapping this region. The format is either "chroband:type" (e.g. "8q24:1") or "chro:GP start-GP end:type" (e.g. "8:120000000-127000000:1"). Types: 1=gain, -1=loss, 9=both; use "0" to exclude a region
REGION SIZE
-
[?] Limit displayed regions to a specific size range (in kB). Smaller CNVs will be removed.
Prefilter arrays
remove controls and worst quality arrays list only QC accepted arrays
These tools were developed for our research projects. You are welcome to try them out, but there is only sparse documentation. If more support and/or custom analysis is needed, please contact Michael Baudis regarding a collaborative project.