publication data cCGH publication data aCGH publication data genomic copy number data in cancer: ICD-O 3 morphologies genomic copy number data in cancer: tumor topographies / locations genomic copy number data in cancer: clinical or diagnostic groups Progenetix - genomic copy number aberrations in cancer arrayMap - genomic array data in cancer additional information / help
Score entities for single or combined imbalances
MATCH (MULTIPLE) REGIONs & types
 
 
type HUGO symbol(s) for selection
[?] Region(s) to be matched; e.g. list only cases which have an imbalance overlapping this region. The format is either "chroband:type" (e.g. "8q24:1") or "chro:GP start-GP end:type" (e.g. "8:120000000-127000000:1"). Types: 1=gain, -1=loss, 9=both; use "0" to exclude a region. the gene selector field lets you chose genes to be inserted into the regions box.
REGION SIZE
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[?] Limit displayed regions to a specific size range (in kB). Smaller CNVs will be removed.
Minimal case number
[?] minimal case number in subset to be considered for scoring
Minimal aberration percent
[?] minimal percent of matching cases in subset to be considered for scoring
 
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These tools were developed for our research projects. You are welcome to try them out, but there is only sparse documentation. If more support and/or custom analysis is needed, please contact Michael Baudis regarding a collaborative project.